Contents Menu Expand Light mode Dark mode Auto light/dark, in light mode Auto light/dark, in dark mode Skip to content
annotating microbial networks
Light Logo Dark Logo
annotating microbial networks

Welcome

  • About

Modules

  • Modules
    • Phen models supported
    • FAPROTAX functions

Installation

  • Install microbetag

Tutorials

  • Input files
  • microbetag on Cytoscape
    • .. using an abundance table
    • .. using an abundance table and a metadata file
    • .. using a co-occurrence network
    • Load networks to Cytoscape and microbetag
  • Exploring annotated networks
  • Enrichment analysis

Tutorials - advanced use

  • Additional tutorials
    • microbetag preparation steps
    • microbetag using custom genomes
    • Large dataset
    • Run microbetag from Python

FAQ

  • Frequently Asked Questions

Developer Guide

  • microbetagDB API
  • API Reference
    • microbetag
      • microbetag.build_mtg_cx2
      • microbetag.config
      • microbetag.genres
      • microbetag.helpers
      • microbetag.networks
      • microbetag.pathway_complementarity
      • microbetag.seed_complementarity
      • microbetag.tools
      • microbetag.utils
    • parse_module_definitions
Back to top
Copyright © 2025, Lab of Microbial Systems Biology
Made with Sphinx and @pradyunsg's Furo