Phen models supported

Phen traits have been annotated to all representative GTDB genomes. Here are the corresponding abbreviations’ descriptions. Each function is referring to the species under study (node).

Abbreviation	Description
NOB	part of the clade of nitrite-oxidizing bacteria
T3SS	expresses a Type III secretion system
T6SS	expresses a Type VI secretion system
aSaccharolytic	has an asaccharolytic lifestyle
aceticAcid	produces acetic acid
aob	is part of the clade of ammonia-oxidizing bacteria
autoCo2	is capable of growth with CO2 as sole carbon source
butanol	produces butanol
butyricAcid	produces butyric acid
dGlucose	utilizes D-glucose
dLacticAcid	produces D lactic acid
ethanol	species producing ethanol
fermentative	has a Fermentative lifestyle
fixingN2	capable of fixing N2
formicAcid	producing formic_acid
gtdbId*	GTDB id of the genome used for this analysis
halophilic	halophilic lifestyle
hydrogen	producing hydrogen
indole	producing indole
isobutyricAcid	producing isobutyric_acid
isovalericAcid	producing isovaleric_acid
lLacticAcid	producing L_lactic_acid
methanotroph	capable of growth with methane as the sole carbon source
nonFermentative	has a nonfermentative lifestyle
phototrophy	is able of phototrophy
psychrophilic	species has a psychrophilic lifestyle
rAcetoin	is producing R_acetoin
saccharolytic	has a Saccharolytic lifestyle
succinicAcid	is producing succinic_acid
sulfateReducer	is capable of using sulfate as terminal electron acceptor
symbiont	has an obligate intracellular lifestyle
thermophilic	species has a thermophilic lifestyle

* not returned by a Phen model