microbetag.msgenre

Script to build GENREs using ModelSEEDpy and DNNGIOR

ModelSEEDpy v0.4.2 comes with a hard constraint, it needs scikit-learn 0.24.2 which is compatible only with Python < 3.10 Also, numpy needs to be 1.26.4

Thus, this script needs to be performed with Python 3.9.

Functions

reconstruct(faa[, outdir])
gapfill(draft_model[, outdir, medium])	draft_model: Path to draft .xml
main()

Module Contents

microbetag.msgenre.reconstruct(faa, outdir=None)

microbetag.msgenre.gapfill(draft_model, outdir=None, medium=None)

draft_model: Path to draft .xml medium: path to tab-separated file .tsv

microbetag.msgenre.main()