microbetag on Cytoscape¶
Regardless of your input type or how you choose to run microbetag,
exploring the final annotated network requires Cytoscape,
along with our custom MGG Cytoscape App developed for this purpose.
Important
INPUT FILES AND PARAMETERS SETTING
For each tutorial, you may download its corresponding input files, and set the parameters as shown in the tutorial.
Parameters settings is essential, especially for the online version of microbetag,
as they can lead either to non-optimal annotations or even errors, exiting microbetag before building an annotated network.
Note
If something is not covered acrross the tutorials, you may check the FAQs section. Rules of thumb on how to set your parameters are also described there.
If you still don't find an answer to your question, feel free to
join us on Matrix.
You can ask about unresolved _how-to_ topics, suggest new features, or simply reach out for support.
In addition, you will always need an abundance table, having or not already a co-occurrence network, and to provide a set of mandatory parameters. We cover those topics in the following tutorial.