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annotating microbial networks
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annotating microbial networks

Welcome

  • About
  • Modules
    • Phen models supported
    • FAPROTAX functions
  • Usage modes

Installation

  • Install microbetag

Tutorials: core topics

  • microbetag on Cytoscape
  • Input files and mandatory parameters
  • Exploring annotated networks
  • Enrichment analysis
  • Loading networks

Tutorials: on-the-fly

  • .. using an abundance table
  • .. using an abundance table and a metadata file
  • .. using a co-occurrence network
  • microbetag preparation steps
  • Large dataset

Tutorials: stand-alone

  • 🎯 microbetag locally
  • .. using custom genomes
  • Configuration file
  • Building GENREs on microbetag
  • on a container

FAQ

  • Frequently Asked Questions

Developer Guide

  • microbetagDB API
  • API Reference
    • microbetag
      • microbetag.build_mtg_cx2
      • microbetag.config
      • microbetag.db
      • microbetag.genres
      • microbetag.helpers
      • microbetag.microbetag
      • microbetag.msgenre
      • microbetag.networks
      • microbetag.pathway_complementarity
      • microbetag.seed_complementarity
      • microbetag.tools
      • microbetag.utils
      • microbetag.wrappers
    • parse_module_definitions
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